If you get it to look OK, it should run OK. If you Really want it strait, unscrew one of them. They are meant to be perfectly strait. Once removed you can roll them on a flat surface to check.
If it were me on vacation, I'd just straiten them till they look good enough and fix further when back home. Enjoy your sailing time and maybe next time, remove the drives before landing
- - - - - Hobie Island Sailing since 2006 - - - - - 2011 & 2012 Hobie AIs and a 2012 TI