The Hobie hulls are not designed to be stored right side up on a flat surface. So transporting the Adventure hull right side up on a flat surface, with the added weight of the amas, would probably get you a dented hull pretty quick.
If you could build a cradle to support the whole rig it might work. But getting it in and out might be a little tricky.
The few minutes it takes to set up and take down may be well worth the trouble.
The Hobie folks haul these things around all the time -- gotta think they know the best way to transport them without wrecking them! It's something to think about.